EnhancerDB
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  3. rs556090256[chr5:173205640]
Enhancers that have rs556090256[chr5:173205640]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556090256[chr5:173205640]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173205637 173205653 GLIS1 JASPAR yes 67903922
chr5 173205638 173205652 GLIS2 JASPAR yes 67903923
chr5 173205638 173205652 GLIS3 JASPAR yes 67903924
chr5 173205638 173205653 ZIC3 JASPAR yes 67903925
chr5 173205638 173205653 ZIC4 JASPAR yes 67903926
Genes associated with rs556090256[chr5:173205640], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More