EnhancerDB
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  3. rs556166708[chr1:1783339]
Enhancers that have rs556166708[chr1:1783339]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1770710 1799155 enh6
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556166708[chr1:1783339]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1783328 1783347 PAX5 JASPAR yes 26206938
chr1 1783335 1783344 HIC2 JASPAR yes 26206939
chr1 1783338 1783342 LFA1 TRANSFAC yes 26206940
chr1 1783338 1783358 TP63 JASPAR yes 26206941
chr1 1783339 1783357 TP53 JASPAR yes 26206942
chr1 1783339 1783357 TP73 JASPAR yes 26206943
Genes associated with rs556166708[chr1:1783339], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More