EnhancerDB
  1. Home
  2. SNP
  3. rs556602623[chr1:19724778]
Enhancers that have rs556602623[chr1:19724778]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19711685 19745775 enh98
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556602623[chr1:19724778]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19724765 19724783 RARA JASPAR yes 27185341
chr1 19724774 19724789 TFAP2A JASPAR yes 27185342
chr1 19724774 19724789 TFAP2C JASPAR yes 27185343
chr1 19724776 19724791 ZIC3 JASPAR yes 27185344
chr1 19724776 19724791 ZIC4 JASPAR yes 27185345
chr1 19724777 19724788 EBF1 JASPAR yes 27185346
chr1 19724777 19724788 TFAP2A JASPAR yes 27185347
chr1 19724777 19724789 TFAP2A JASPAR yes 27185348
chr1 19724777 19724789 TFAP2B JASPAR yes 27185349
chr1 19724777 19724789 TFAP2C JASPAR yes 27185350
chr1 19724777 19724791 ZIC1 JASPAR yes 27185351
chr1 19724778 19724787 TFAP2A JASPAR yes 27185352
Genes associated with rs556602623[chr1:19724778], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More