EnhancerDB
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  3. rs556602764[chr12:52513616]
Enhancers that have rs556602764[chr12:52513616]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs556602764[chr12:52513616]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52513207 52519034 P63 GTRD no Skin (Keratinocyte) 21546171
chr12 52513208 52513628 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546173
chr12 52513239 52515430 P63 GTRD no Skin (Keratinocyte) 21546177
chr12 52513355 52513631 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546179
chr12 52513383 52514799 P63 GTRD no Skin (Keratinocyte) 21546180
chr12 52513384 52515273 P63 GTRD no Skin (Keratinocyte) 21546181
chr12 52513610 52513620 GCM2 JASPAR yes 120918602
Genes associated with rs556602764[chr12:52513616], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More