EnhancerDB
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  3. rs556614357[chr1:229353879]
Enhancers that have rs556614357[chr1:229353879]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs556614357[chr1:229353879]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229353558 229354088 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390742
chr1 229353564 229354080 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390743
chr1 229353604 229353884 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390744
chr1 229353613 229353903 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21390745
chr1 229353629 229353919 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390746
chr1 229353644 229353894 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390748
chr1 229353686 229353910 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390750
chr1 229353871 229353881 SREBF2 JASPAR yes 35975595
Genes associated with rs556614357[chr1:229353879], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More