EnhancerDB
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  3. rs55668105[chr1:234668010]
Enhancers that have rs55668105[chr1:234668010]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234649189 234693444 enh991
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs55668105[chr1:234668010]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234667569 234668711 ZNF274 GTRD no Blood (GM12878) 107880337
chr1 234667722 234668579 ZNF274 GTRD no Blood (GM12878) 107880338
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 21394101
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 107880339
chr1 234667737 234668977 ZNF143 GTRD no Epithelial (MCF-7) 107880340
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 21394102
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 107880341
chr1 234667876 234668876 ZNF143 GTRD no Epithelial (MCF-7) 107880342
chr1 234667896 234668771 ZNF143 GTRD no Epithelial (MCF-7) 21394103
chr1 234667896 234668771 ZNF143 GTRD no Epithelial (MCF-7) 107880343
chr1 234667991 234668011 RREB1 JASPAR yes 36284661
chr1 234667993 234668013 RREB1 JASPAR yes 36284662
Genes associated with rs55668105[chr1:234668010], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More