EnhancerDB
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  3. rs556878053[chr17:80488392]
Enhancers that have rs556878053[chr17:80488392]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80480565 80515355 enh4649
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs556878053[chr17:80488392]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80488380 80488401 IRF1 JASPAR yes 56370835
chr17 80488381 80488396 FOXP1 JASPAR yes 56370836
chr17 80488381 80488402 IRF1 JASPAR yes 56370837
chr17 80488382 80488393 FOXP2 JASPAR yes 56370838
chr17 80488382 80488397 STAT2 JASPAR yes 56370839
chr17 80488382 80488403 IRF1 JASPAR yes 56370840
chr17 80488383 80488398 FOXP1 JASPAR yes 56370841
chr17 80488383 80488404 IRF1 JASPAR yes 56370842
chr17 80488384 80488405 IRF1 JASPAR yes 56370843
chr17 80488385 80488400 FOXP1 JASPAR yes 56370844
chr17 80488386 80488401 FOXP1 JASPAR yes 56370845
chr17 80488387 80488402 FOXP1 JASPAR yes 56370846
chr17 80488388 80488403 FOXP1 JASPAR yes 56370847
chr17 80488389 80488404 FOXP1 JASPAR yes 56370848
chr17 80488390 80488405 FOXP1 JASPAR yes 56370849
chr17 80488391 80488406 FOXP1 JASPAR yes 56370850
chr17 80488392 80488407 FOXP1 JASPAR yes 56370851
Genes associated with rs556878053[chr17:80488392], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More