EnhancerDB
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  3. rs556949410[chr6:29935551]
Enhancers that have rs556949410[chr6:29935551]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 29930235 29938316 enh9028
Liver Astrocyte Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr6 29935319 29935652 vista51502
VISTA
Transcript factors that have rs556949410[chr6:29935551]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 29935295 29936003 GATA1 UCSC Txn Factor no Conserved 108539463
chr6 29935347 29935637 NR2F2 UCSC Txn Factor no Conserved 108539464
chr6 29935363 29935597 TEAD4 UCSC Txn Factor no Conserved 108539465
chr6 29935375 29935604 TAL1 UCSC Txn Factor no Conserved 108539466
chr6 29935541 29935562 IRF1 JASPAR yes 70342179
chr6 29935541 29935562 IRF1 JASPAR yes 101019029
chr6 29935545 29935559 SPI1 JASPAR yes 70342180
chr6 29935545 29935559 SPIC JASPAR yes 70342181
chr6 29935545 29935559 SPI1 JASPAR yes 101019030
chr6 29935545 29935559 SPIC JASPAR yes 101019031
chr6 29935546 29935560 SPIC JASPAR yes 70342182
chr6 29935546 29935560 SPIC JASPAR yes 101019032
chr6 29935549 29935559 GABPA JASPAR yes 70342183
chr6 29935549 29935559 GABPA JASPAR yes 101019033
chr6 29935551 29935557 ETS1 JASPAR yes 70342184
chr6 29935551 29935557 SPI1 JASPAR yes 70342185
chr6 29935551 29935557 ETS1 JASPAR yes 101019034
chr6 29935551 29935557 SPI1 JASPAR yes 101019035
Genes associated with rs556949410[chr6:29935551], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More