EnhancerDB
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  3. rs557220117[chr12:109112354]
Enhancers that have rs557220117[chr12:109112354]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109103554 109121615 enh14974
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs557220117[chr12:109112354]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109112335 109112356 IRF1 JASPAR yes 123616013
chr12 109112336 109112357 IRF1 JASPAR yes 123616015
chr12 109112337 109112358 IRF1 JASPAR yes 123616016
chr12 109112339 109112354 PRDM1 JASPAR yes 123616017
chr12 109112339 109112354 STAT2 JASPAR yes 123616018
chr12 109112341 109112362 IRF1 JASPAR yes 123616019
chr12 109112342 109112363 IRF1 JASPAR yes 123616020
chr12 109112343 109112358 IRF9 JASPAR yes 123616021
chr12 109112344 109112358 IRF7 JASPAR yes 123616022
chr12 109112344 109112358 IRF8 JASPAR yes 123616023
chr12 109112345 109112359 STAT1 JASPAR yes 123616024
chr12 109112345 109112360 PRDM1 JASPAR yes 123616025
chr12 109112345 109112360 STAT2 JASPAR yes 123616026
chr12 109112345 109112363 IRF2 JASPAR yes 123616027
chr12 109112346 109112358 IRF1 JASPAR yes 123616028
chr12 109112346 109112361 STAT2 JASPAR yes 123616029
chr12 109112353 109112368 SOX21 JASPAR yes 123616030
chr12 109112353 109112369 SOX4 JASPAR yes 123616031
Genes associated with rs557220117[chr12:109112354], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More