EnhancerDB
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  3. rs55754816[chr2:228270964]
Enhancers that have rs55754816[chr2:228270964]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 228254625 228287055 enh19284
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr2 228270733 228271155 vista35019
VISTA
Transcript factors that have rs55754816[chr2:228270964]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 228270805 228271165 CTCF UCSC Txn Factor no Conserved 108435508
chr2 228270826 228271648 EP300 UCSC Txn Factor no Conserved 108435509
chr2 228270849 228271126 SMC3 UCSC Txn Factor no Conserved 108435510
chr2 228270865 228271229 TEAD4 UCSC Txn Factor no Conserved 108435511
chr2 228270867 228271145 RAD21 UCSC Txn Factor no Conserved 108435512
chr2 228270901 228271202 NFIC UCSC Txn Factor no Conserved 108435513
chr2 228270908 228271168 FOSL2 UCSC Txn Factor no Conserved 108435514
chr2 228270964 228270973 NFIX JASPAR yes 22222159
chr2 228270964 228270973 NFIX JASPAR yes 81519727
chr2 228270964 228270974 NFIA JASPAR yes 22222160
chr2 228270964 228270974 NFIA JASPAR yes 81519728
Genes associated with rs55754816[chr2:228270964], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More