EnhancerDB
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  3. rs55788686[chr1:157977948]
Enhancers that have rs55788686[chr1:157977948]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 157969514 158001213 enh12308
Brain (SK-N-MC) Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs55788686[chr1:157977948]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 157977940 157977956 GLIS1 JASPAR yes 32456564
chr1 157977941 157977955 GLIS2 JASPAR yes 32456565
chr1 157977941 157977955 GLIS3 JASPAR yes 32456566
chr1 157977944 157977965 ZNF263 JASPAR yes 32456567
chr1 157977945 157977955 ZNF740 JASPAR yes 32456568
chr1 157977947 157977957 SP1 JASPAR yes 32456569
chr1 157977947 157977968 ZNF263 JASPAR yes 32456570
chr1 157977948 157977958 SP1 JASPAR yes 32456571
chr1 157977948 157977969 ZNF263 JASPAR yes 32456572
Genes associated with rs55788686[chr1:157977948], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 158223927 158228059 + CD1A ENSG00000158477.6 158223927 245979 Esophagus 0.165317 1399