EnhancerDB
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  3. rs558388315[chr12:125233827]
Enhancers that have rs558388315[chr12:125233827]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs558388315[chr12:125233827]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125233183 125233902 ZNF274 GTRD no Bone Marrow (K562) 21582727
chr12 125233813 125233832 REST JASPAR yes 124417340
chr12 125233821 125233829 ISL2 JASPAR yes 124417341
chr12 125233821 125233830 NKX3-2 JASPAR yes 124417342
Genes associated with rs558388315[chr12:125233827], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More