EnhancerDB
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  3. rs558503673[chr1:205266175]
Enhancers that have rs558503673[chr1:205266175]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205259785 205270135 enh12589
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs558503673[chr1:205266175]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205265747 205266622 TCF7L2 GTRD no Colon (HCT116) 21371695
chr1 205265772 205267510 TCF7L2 GTRD no Colon (HCT116) 21371696
chr1 205265825 205266831 TEF1 GTRD no Bone (Osteoblast) 21371697
chr1 205265862 205266731 TCF7L2 GTRD no Colon (HCT116) 21371698
chr1 205265890 205266618 TCF7L2 GTRD no Colon (HCT116) 21371699
chr1 205265925 205268073 ZNF274 GTRD no Cervix (HeLa-S3) 21371700
chr1 205265925 205268073 ZNF274 GTRD no Cervix (HeLa-S3) 107861710
chr1 205265928 205266725 TCF7L2 GTRD no Colon (HCT116) 21371701
chr1 205266061 205266325 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21371702
chr1 205266079 205266646 ZNF274 GTRD no Cervix (HeLa-S3) 21371703
chr1 205266120 205266676 TCF7L2 GTRD no Colon (HCT116) 21371704
chr1 205266125 205266559 TCF7L2 GTRD no Colon (HCT116) 21371705
chr1 205266127 205266443 TCF7L2 GTRD no Colon (HCT116) 21371706
chr1 205266137 205266502 ZNF274 GTRD no Cervix (HeLa-S3) 21371707
chr1 205266144 205266584 ZNF274 GTRD no Cervix (HeLa-S3) 21371708
chr1 205266159 205266442 ZNF274 GTRD no Cervix (HeLa-S3) 21371709
chr1 205266170 205266610 TEF1 GTRD no Bone (Osteoblast) 21371710
chr1 205266171 205266575 ZNF274 GTRD no Cervix (HeLa-S3) 21371711
chr1 205266172 205266186 MTF1 JASPAR yes 34752954
Genes associated with rs558503673[chr1:205266175], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More