EnhancerDB
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  3. rs558606985[chr14:69142963]
Enhancers that have rs558606985[chr14:69142963]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr14 69119325 69164775 enh3300
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs558606985[chr14:69142963]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr14 69142276 69143249 SOX2 GTRD no Neural Stem Cells (H9) 21625654
chr14 69142276 69143249 SOX2 GTRD no Neural Stem Cells (H9) 108110190
chr14 69142382 69143267 SOX2 GTRD no Neural Stem Cells (H9) 21625655
chr14 69142382 69143267 SOX2 GTRD no Neural Stem Cells (H9) 108110191
chr14 69142842 69143299 SOX2 GTRD no Neural Stem Cells (H9) 21625656
chr14 69142842 69143299 SOX2 GTRD no Neural Stem Cells (H9) 108110192
Genes associated with rs558606985[chr14:69142963], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More