EnhancerDB
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  3. rs558688156[chr19:2617720]
Enhancers that have rs558688156[chr19:2617720]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2605719 2641695 enh4960
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs558688156[chr19:2617720]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2616581 2618471 ZNF274 GTRD no Blood (GM12878) 21837652
chr19 2616581 2618471 ZNF274 GTRD no Blood (GM12878) 108363219
chr19 2616618 2619986 ZNF274 GTRD no Blood (GM12878) 21837655
chr19 2616618 2619986 ZNF274 GTRD no Blood (GM12878) 108363222
chr19 2617069 2617848 TCF7L2 GTRD no Colon (HCT116) 21837674
chr19 2617069 2617848 TCF7L2 GTRD no Colon (HCT116) 108363242
chr19 2617702 2617723 IRF1 JASPAR yes 112083881
chr19 2617703 2617724 IRF1 JASPAR yes 112083883
chr19 2617708 2617729 IRF1 JASPAR yes 112083884
chr19 2617709 2617730 IRF1 JASPAR yes 112083885
chr19 2617714 2617735 IRF1 JASPAR yes 112083887
chr19 2617715 2617730 FOXP1 JASPAR yes 112083888
chr19 2617715 2617736 IRF1 JASPAR yes 112083889
chr19 2617716 2617728 FOXC2 JASPAR yes 112083890
chr19 2617718 2617722 YY1 TRANSFAC yes 112083891
chr19 2617719 2617734 FOXP1 JASPAR yes 112083892
chr19 2617720 2617735 FOXP1 JASPAR yes 112083893
Genes associated with rs558688156[chr19:2617720], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More