EnhancerDB
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  3. rs558828827[chr1:212780803]
Enhancers that have rs558828827[chr1:212780803]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212765205 212784697 enh12647
Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1)
chr1 212780782 212781279 vista5016
VISTA
Transcript factors that have rs558828827[chr1:212780803]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212778301 212781617 EZH2 UCSC Txn Factor no Conserved 107869174
chr1 212779921 212780831 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107869175
chr1 212780052 212787859 POLR2A UCSC Txn Factor no Conserved 107869176
chr1 212780210 212781000 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21379014
chr1 212780210 212781000 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107869177
chr1 212780418 212782777 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869178
chr1 212780468 212780878 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107869179
chr1 212780521 212780825 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869180
chr1 212780537 212780861 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869181
chr1 212780593 212781229 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107869182
chr1 212780613 212781403 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21379015
chr1 212780613 212781403 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107869183
chr1 212780634 212780954 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869184
chr1 212780741 212781151 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107869185
chr1 212780750 212781114 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869186
chr1 212780759 212781143 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107869187
chr1 212780782 212781231 ZNF274 GTRD no Blood (GM12878) 107869188
chr1 212780790 212781180 ZNF274 GTRD no Blood (GM12878) 107869189
chr1 212780792 212780804 INSM1 JASPAR yes 35141159
chr1 212780792 212780804 INSM1 JASPAR yes 118454454
Genes associated with rs558828827[chr1:212780803], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More