EnhancerDB
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  3. rs55899562[chr1:117420802]
Enhancers that have rs55899562[chr1:117420802]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117411045 117431652 enh12190
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Stomach Skin (Keratinocyte) Epithelial (MCF-7) Brain (SK-N-SH) Thyroid Neural Stem Cells (H9) Thymus Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung
Transcript factors that have rs55899562[chr1:117420802]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117420469 117421019 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334030
chr1 117420496 117420992 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334031
chr1 117420529 117420999 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334032
chr1 117420541 117421111 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21334033
chr1 117420584 117420840 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334034
chr1 117420689 117420969 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21334035
chr1 117420787 117420806 REST JASPAR yes 31847859
chr1 117420797 117420817 RREB1 JASPAR yes 31847860
chr1 117420799 117420819 RREB1 JASPAR yes 31847861
chr1 117420801 117420821 RREB1 JASPAR yes 31847862
Genes associated with rs55899562[chr1:117420802], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More