EnhancerDB
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  3. rs55916400[chr2:38657831]
Enhancers that have rs55916400[chr2:38657831]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 38653105 38683515 enh33236
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Stomach Colon (HCT116) Breast Uterus Thyroid Lung (PC-9) Pancreas Muscle (Myotube) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs55916400[chr2:38657831]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 38657810 38657831 IRF1 JASPAR yes 73139506
chr2 38657812 38657833 IRF1 JASPAR yes 73139508
chr2 38657816 38657831 PRDM1 JASPAR yes 73139509
chr2 38657816 38657837 IRF1 JASPAR yes 73139510
chr2 38657817 38657832 FOXP1 JASPAR yes 73139511
chr2 38657818 38657833 IRF9 JASPAR yes 73139512
chr2 38657819 38657833 IRF7 JASPAR yes 73139513
chr2 38657819 38657833 IRF8 JASPAR yes 73139514
chr2 38657820 38657834 STAT1 JASPAR yes 73139515
chr2 38657820 38657835 STAT2 JASPAR yes 73139516
chr2 38657831 38657835 YY1 TRANSFAC yes 73139517
Genes associated with rs55916400[chr2:38657831], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More