EnhancerDB
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  3. rs55939066[chr5:173209355]
Enhancers that have rs55939066[chr5:173209355]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 173178093 173268555 enh8886
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr5 173208911 173209406 vista50235
VISTA
Transcript factors that have rs55939066[chr5:173209355]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 173208875 173209721 TCF7L2 UCSC Txn Factor no Conserved 108537608
chr5 173208966 173210085 GATA2 UCSC Txn Factor no Conserved 108537609
chr5 173209336 173209355 PAX5 JASPAR yes 67904481
chr5 173209336 173209355 PAX5 JASPAR yes 70766984
chr5 173209339 173209360 IRF1 JASPAR yes 67904482
chr5 173209339 173209360 IRF1 JASPAR yes 70766985
chr5 173209341 173209356 IRF9 JASPAR yes 67904483
chr5 173209341 173209356 IRF9 JASPAR yes 70766986
chr5 173209343 173209358 STAT2 JASPAR yes 67904484
chr5 173209343 173209358 STAT2 JASPAR yes 70766987
chr5 173209344 173209356 IRF1 JASPAR yes 67904485
chr5 173209344 173209356 IRF1 JASPAR yes 70766988
Genes associated with rs55939066[chr5:173209355], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More