EnhancerDB
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  3. rs559565113[chr1:230249236]
Enhancers that have rs559565113[chr1:230249236]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230237385 230313644 enh12770
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs559565113[chr1:230249236]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230249113 230249763 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21391454
chr1 230249113 230249763 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878670
chr1 230249226 230249246 TP63 JASPAR yes 36022104
chr1 230249234 230249243 ZEB1 JASPAR yes 36022105
chr1 230249234 230249248 ZIC1 JASPAR yes 36022106
chr1 230249234 230249249 ZIC3 JASPAR yes 36022107
chr1 230249234 230249249 ZIC4 JASPAR yes 36022108
chr1 230249235 230249245 TCF3 JASPAR yes 36022109
chr1 230249235 230249245 TCF4 JASPAR yes 36022110
chr1 230249236 230249245 SNAI2 JASPAR yes 36022111
Genes associated with rs559565113[chr1:230249236], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More