EnhancerDB
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  3. rs559720088[chr16:4332108]
Enhancers that have rs559720088[chr16:4332108]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4330820 4352135 enh16514
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs559720088[chr16:4332108]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4331935 4333290 TCF7L2 GTRD no Colon (HCT116) 21686278
chr16 4331940 4333630 ZNF143 GTRD no Epithelial (MCF-7) 21686279
chr16 4331940 4333886 ZNF143 GTRD no Epithelial (MCF-7) 21686280
chr16 4332022 4333423 TCF7L2 GTRD no Colon (HCT116) 21686281
chr16 4332103 4332115 POU2F1 JASPAR yes 9265764
chr16 4332103 4332116 POU3F3 JASPAR yes 9265765
chr16 4332104 4332116 POU3F1 JASPAR yes 9265766
chr16 4332104 4332116 POU3F2 JASPAR yes 9265767
chr16 4332104 4332117 POU2F2 JASPAR yes 9265768
chr16 4332105 4332113 FOXL1 JASPAR yes 9265769
chr16 4332105 4332114 POU3F4 JASPAR yes 9265770
Genes associated with rs559720088[chr16:4332108], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More