EnhancerDB
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  3. rs55988516[chr17:857125]
Enhancers that have rs55988516[chr17:857125]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 845785 881195 enh32038
Astrocyte Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs55988516[chr17:857125]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 857110 857129 PAX5 JASPAR yes 52644754
chr17 857113 857130 PAX1 JASPAR yes 52644755
chr17 857113 857130 PAX9 JASPAR yes 52644756
Genes associated with rs55988516[chr17:857125], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More