EnhancerDB
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  3. rs56040827[chr6:30815212]
Enhancers that have rs56040827[chr6:30815212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30740965 30818275 enh23149
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs56040827[chr6:30815212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30815191 30815212 IRF1 JASPAR yes 101058983
chr6 30815192 30815213 IRF1 JASPAR yes 101058985
chr6 30815194 30815215 IRF1 JASPAR yes 101058988
chr6 30815195 30815216 IRF1 JASPAR yes 101058990
chr6 30815196 30815217 IRF1 JASPAR yes 101058992
chr6 30815197 30815212 FOXP1 JASPAR yes 101058993
chr6 30815197 30815218 IRF1 JASPAR yes 101058994
chr6 30815198 30815213 FOXP1 JASPAR yes 101058995
chr6 30815198 30815219 IRF1 JASPAR yes 101058996
chr6 30815199 30815214 FOXP1 JASPAR yes 101058997
chr6 30815199 30815220 IRF1 JASPAR yes 101058998
chr6 30815200 30815215 FOXP1 JASPAR yes 101058999
chr6 30815200 30815221 IRF1 JASPAR yes 101059000
chr6 30815201 30815216 FOXP1 JASPAR yes 101059001
chr6 30815201 30815222 IRF1 JASPAR yes 101059002
chr6 30815202 30815217 FOXP1 JASPAR yes 101059003
chr6 30815205 30815220 STAT2 JASPAR yes 101059004
chr6 30815207 30815228 IRF1 JASPAR yes 101059005
chr6 30815209 30815229 RREB1 JASPAR yes 101059006
chr6 30815210 30815224 ONECUT3 JASPAR yes 101059007
chr6 30815212 30815224 IRF1 JASPAR yes 101059008
chr6 30815212 30815227 RUNX2 JASPAR yes 101059009
Genes associated with rs56040827[chr6:30815212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More