EnhancerDB
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  3. rs560421560[chr17:57832456]
Enhancers that have rs560421560[chr17:57832456]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57820705 57849586 enh4505
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs560421560[chr17:57832456]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57831844 57832460 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21775295
chr17 57831844 57832460 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108276412
chr17 57832247 57834775 ZNF274 GTRD no Liver (HepG2) 21775325
chr17 57832247 57834775 ZNF274 GTRD no Liver (HepG2) 108276467
chr17 57832247 57834775 ZNF274 GTRD no Liver (HepG2) 108276468
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 21775326
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 108276469
chr17 57832261 57836729 ZNF143 GTRD no Epithelial (MCF-7) 108276470
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 21775327
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276471
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276472
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276473
chr17 57832336 57834932 ZNF143 GTRD no Epithelial (MCF-7) 21775328
chr17 57832336 57834932 ZNF143 GTRD no Epithelial (MCF-7) 108276474
chr17 57832336 57834932 ZNF143 GTRD no Epithelial (MCF-7) 108276475
chr17 57832389 57833904 ZNF274 GTRD no Liver (HepG2) 21775329
chr17 57832389 57833904 ZNF274 GTRD no Liver (HepG2) 108276476
chr17 57832420 57833840 ZNF274 GTRD no Liver (HepG2) 21775330
chr17 57832420 57833840 ZNF274 GTRD no Liver (HepG2) 108276477
chr17 57832431 57834382 ZNF143 GTRD no Epithelial (MCF-7) 21775331
chr17 57832431 57834382 ZNF143 GTRD no Epithelial (MCF-7) 108276478
chr17 57832453 57832474 IRF1 JASPAR yes 55077625
chr17 57832454 57832475 ZNF263 JASPAR yes 55077626
chr17 57832455 57832476 IRF1 JASPAR yes 55077627
Genes associated with rs560421560[chr17:57832456], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More