EnhancerDB
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  3. rs560460416[chr2:102350460]
Enhancers that have rs560460416[chr2:102350460]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 102318065 102395755 enh5746
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs560460416[chr2:102350460]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 102350454 102350466 PKNOX2 JASPAR yes 75832508
chr2 102350455 102350465 ID4 JASPAR yes 75832509
chr2 102350455 102350465 TCF3 JASPAR yes 75832510
chr2 102350455 102350465 TCF4 JASPAR yes 75832511
chr2 102350456 102350465 SNAI2 JASPAR yes 75832512
chr2 102350457 102350462 USF2 TRANSFAC yes 75832513
Genes associated with rs560460416[chr2:102350460], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More