EnhancerDB
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  3. rs560550284[chr16:88834977]
Enhancers that have rs560550284[chr16:88834977]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs560550284[chr16:88834977]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88833625 88836287 TCF7L2 GTRD no Colon (HCT116) 21736939
chr16 88833625 88836287 TCF7L2 GTRD no Colon (HCT116) 108223393
chr16 88834612 88836412 ZNF143 GTRD no Epithelial (MCF-7) 21736940
chr16 88834612 88836412 ZNF143 GTRD no Epithelial (MCF-7) 108223394
chr16 88834967 88834981 PLAG1 JASPAR yes 12302162
chr16 88834971 88834991 ESR1 JASPAR yes 12302164
Genes associated with rs560550284[chr16:88834977], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More