EnhancerDB
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  3. rs560562388[chr12:52513158]
Enhancers that have rs560562388[chr12:52513158]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52508085 52522855 enh2356
Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Spleen Liver (HepG2) Muscle (A673) Heart
Transcript factors that have rs560562388[chr12:52513158]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52512945 52513310 ZNF274 GTRD no Liver (HepG2) 21546156
chr12 52512990 52513606 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546157
chr12 52513010 52513401 ZNF274 GTRD no Liver (HepG2) 21546158
chr12 52513039 52513583 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546159
chr12 52513073 52513529 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546160
chr12 52513090 52513490 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546161
chr12 52513116 52513506 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546162
chr12 52513155 52513431 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546163
chr12 52513156 52513171 FOXP1 JASPAR yes 120918488
chr12 52513157 52513172 FOXP1 JASPAR yes 120918489
chr12 52513158 52513173 FOXP1 JASPAR yes 120918490
chr12 52513158 52513179 IRF1 JASPAR yes 120918491
chr12 52513158 52513498 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21546164
Genes associated with rs560562388[chr12:52513158], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More