EnhancerDB
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  3. rs56057590[chr2:232542072]
Enhancers that have rs56057590[chr2:232542072]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232518645 232563095 enh6202
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs56057590[chr2:232542072]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232542061 232542074 NR2F1 JASPAR yes 81735299
chr2 232542067 232542081 PAX6 JASPAR yes 81735300
Genes associated with rs56057590[chr2:232542072], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr2 232571605 232578251 + PTMA ENSG00000187514.10 232571605 29533 Pancreas 0.280509 3237