EnhancerDB
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  3. rs56098475[chr1:25093534]
Enhancers that have rs56098475[chr1:25093534]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 25085286 25108435 enh141
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Blood (Karpas-422) Uterus Stomach Skin (Keratinocyte) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs56098475[chr1:25093534]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 25093514 25093535 IRF1 JASPAR yes 27529001
chr1 25093515 25093536 IRF1 JASPAR yes 27529003
chr1 25093516 25093537 IRF1 JASPAR yes 27529005
chr1 25093517 25093538 IRF1 JASPAR yes 27529007
chr1 25093518 25093539 IRF1 JASPAR yes 27529009
chr1 25093519 25093534 FOXP1 JASPAR yes 27529010
chr1 25093519 25093540 IRF1 JASPAR yes 27529011
chr1 25093520 25093535 FOXP1 JASPAR yes 27529012
chr1 25093520 25093541 IRF1 JASPAR yes 27529013
chr1 25093521 25093536 FOXP1 JASPAR yes 27529014
chr1 25093521 25093542 IRF1 JASPAR yes 27529015
chr1 25093522 25093537 FOXP1 JASPAR yes 27529016
chr1 25093522 25093543 IRF1 JASPAR yes 27529017
chr1 25093523 25093538 FOXP1 JASPAR yes 27529018
chr1 25093523 25093544 IRF1 JASPAR yes 27529019
chr1 25093524 25093539 FOXP1 JASPAR yes 27529020
chr1 25093524 25093545 IRF1 JASPAR yes 27529021
chr1 25093525 25093540 FOXP1 JASPAR yes 27529022
chr1 25093527 25093542 FOXP1 JASPAR yes 27529023
chr1 25093528 25093549 IRF1 JASPAR yes 27529024
chr1 25093529 25093544 FOXP1 JASPAR yes 27529025
chr1 25093529 25093550 IRF1 JASPAR yes 27529026
chr1 25093530 25093551 IRF1 JASPAR yes 27529027
chr1 25093534 25093549 PRDM1 JASPAR yes 27529028
chr1 25093534 25093555 IRF1 JASPAR yes 27529029
Genes associated with rs56098475[chr1:25093534], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More