EnhancerDB
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  3. rs56117812[chr1:27765808]
Enhancers that have rs56117812[chr1:27765808]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27742945 27784244 enh174
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs56117812[chr1:27765808]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27765799 27765809 GSX2 JASPAR yes 27694014
chr1 27765799 27765809 HOXB2 JASPAR yes 27694015
chr1 27765799 27765809 HOXB3 JASPAR yes 27694016
chr1 27765799 27765809 MNX1 JASPAR yes 27694017
chr1 27765799 27765809 POU6F1 JASPAR yes 27694018
chr1 27765799 27765810 HOXA10 JASPAR yes 27694019
chr1 27765800 27765808 LMX1A JASPAR yes 27694020
chr1 27765800 27765808 LMX1B JASPAR yes 27694021
chr1 27765800 27765808 NKX6-1 JASPAR yes 27694022
chr1 27765800 27765808 NKX6-2 JASPAR yes 27694023
chr1 27765800 27765808 VAX1 JASPAR yes 27694024
chr1 27765800 27765808 VAX2 JASPAR yes 27694025
chr1 27765800 27765808 VSX1 JASPAR yes 27694026
chr1 27765800 27765808 VSX2 JASPAR yes 27694027
Genes associated with rs56117812[chr1:27765808], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More