EnhancerDB
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  3. rs56164405[chr1:39610328]
Enhancers that have rs56164405[chr1:39610328]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs56164405[chr1:39610328]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39610320 39610341 IRF1 JASPAR yes 28257713
chr1 39610325 39610340 FOXP1 JASPAR yes 28257714
chr1 39610327 39610342 FOXP1 JASPAR yes 28257715
Genes associated with rs56164405[chr1:39610328], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More