EnhancerDB
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  3. rs561717679[chr6:16346293]
Enhancers that have rs561717679[chr6:16346293]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 16329544 16348350 enh8975
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs561717679[chr6:16346293]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 16346285 16346301 POU4F2 JASPAR yes 100290469
chr6 16346285 16346301 POU4F3 JASPAR yes 100290470
chr6 16346287 16346298 HOXA10 JASPAR yes 100290471
chr6 16346287 16346301 POU4F1 JASPAR yes 100290472
chr6 16346287 16346302 HNF1A JASPAR yes 100290473
chr6 16346288 16346298 GSX2 JASPAR yes 100290474
chr6 16346288 16346298 HOXB2 JASPAR yes 100290475
chr6 16346288 16346298 HOXB3 JASPAR yes 100290476
chr6 16346288 16346298 MNX1 JASPAR yes 100290477
chr6 16346288 16346298 POU6F1 JASPAR yes 100290478
chr6 16346288 16346301 HNF1B JASPAR yes 100290479
chr6 16346288 16346302 POU4F1 JASPAR yes 100290480
chr6 16346288 16346304 POU4F3 JASPAR yes 100290481
chr6 16346289 16346297 LMX1A JASPAR yes 100290482
chr6 16346289 16346297 LMX1B JASPAR yes 100290483
chr6 16346289 16346297 NKX6-1 JASPAR yes 100290484
chr6 16346289 16346297 NKX6-2 JASPAR yes 100290485
chr6 16346289 16346297 VAX1 JASPAR yes 100290486
chr6 16346289 16346297 VAX2 JASPAR yes 100290487
chr6 16346289 16346297 VSX1 JASPAR yes 100290488
chr6 16346289 16346297 VSX2 JASPAR yes 100290489
chr6 16346289 16346305 POU4F2 JASPAR yes 100290490
chr6 16346289 16346305 POU4F3 JASPAR yes 100290491
chr6 16346290 16346305 FOXA1 JASPAR yes 100290492
chr6 16346291 16346303 FOXI1 JASPAR yes 100290493
chr6 16346291 16346305 POU4F1 JASPAR yes 100290494
chr6 16346291 16346306 HNF1A JASPAR yes 100290495
chr6 16346292 16346304 FOXC2 JASPAR yes 100290496
chr6 16346292 16346305 HNF1B JASPAR yes 100290497
chr6 16346292 16346306 ONECUT2 JASPAR yes 100290498
chr6 16346292 16346306 ONECUT3 JASPAR yes 100290499
chr6 16346292 16346306 POU4F1 JASPAR yes 100290500
chr6 16346293 16346304 FOXB1 JASPAR yes 100290501
chr6 16346293 16346304 FOXC1 JASPAR yes 100290502
chr6 16346293 16346304 PROP1 JASPAR yes 100290503
chr6 16346293 16346309 POU4F2 JASPAR yes 100290504
chr6 16346293 16346309 POU4F3 JASPAR yes 100290505
Genes associated with rs561717679[chr6:16346293], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More