EnhancerDB
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  3. rs561896779[chr1:23444000]
Enhancers that have rs561896779[chr1:23444000]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 23435285 23459230 enh11606
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Thyroid Neural Stem Cells (H9) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs561896779[chr1:23444000]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 23443992 23444006 PLAG1 JASPAR yes 27414463
chr1 23443994 23444006 TFAP2A JASPAR yes 27414464
chr1 23443994 23444006 TFAP2B JASPAR yes 27414465
chr1 23443994 23444006 TFAP2C JASPAR yes 27414466
chr1 23443994 23444007 TFAP2A JASPAR yes 27414467
chr1 23443994 23444007 TFAP2B JASPAR yes 27414468
chr1 23443994 23444007 TFAP2C JASPAR yes 27414469
chr1 23443994 23444009 TFAP2A JASPAR yes 27414470
chr1 23443994 23444009 TFAP2C JASPAR yes 27414471
chr1 23443995 23444004 TFAP2A JASPAR yes 27414472
chr1 23443995 23444006 EBF1 JASPAR yes 27414473
chr1 23443995 23444010 ZIC3 JASPAR yes 27414474
chr1 23443997 23444017 RREB1 JASPAR yes 27414475
chr1 23443998 23444008 ZNF740 JASPAR yes 27414476
chr1 23443998 23444018 RREB1 JASPAR yes 27414477
chr1 23443999 23444009 SP1 JASPAR yes 27414478
chr1 23443999 23444009 ZNF740 JASPAR yes 27414479
chr1 23443999 23444019 RREB1 JASPAR yes 27414480
chr1 23443999 23444020 ZNF263 JASPAR yes 27414481
chr1 23444000 23444010 SP1 JASPAR yes 27414482
chr1 23444000 23444010 ZNF740 JASPAR yes 27414483
chr1 23444000 23444020 RREB1 JASPAR yes 27414484
chr1 23444000 23444021 ZNF263 JASPAR yes 27414485
Genes associated with rs561896779[chr1:23444000], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More