EnhancerDB
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  3. rs562009738[chr1:16212612]
Enhancers that have rs562009738[chr1:16212612]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 16203705 16215635 enh81
Bone Marrow (K562) Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562009738[chr1:16212612]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 16211496 16213648 ZNF143 GTRD no Epithelial (MCF-7) 107802204
chr1 16212602 16212623 IRF1 JASPAR yes 27010907
chr1 16212604 16212619 STAT2 JASPAR yes 27010908
chr1 16212605 16212619 STAT1 JASPAR yes 27010909
chr1 16212606 16212618 IRF1 JASPAR yes 27010910
chr1 16212606 16212620 IRF7 JASPAR yes 27010911
chr1 16212608 16212614 TCF4 TRANSFAC yes 27010912
chr1 16212608 16212623 FOXP1 JASPAR yes 27010913
chr1 16212609 16212620 FOXP2 JASPAR yes 27010914
chr1 16212609 16212629 RREB1 JASPAR yes 27010915
chr1 16212609 16212630 IRF1 JASPAR yes 27010916
chr1 16212610 16212631 IRF1 JASPAR yes 27010917
Genes associated with rs562009738[chr1:16212612], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More