EnhancerDB
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  3. rs562290857[chr12:53964709]
Enhancers that have rs562290857[chr12:53964709]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 53952154 53966435 enh2368
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Colon (HCT116) Uterus Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs562290857[chr12:53964709]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 53964699 53964713 BATF3 JASPAR yes 120992445
chr12 53964708 53964719 HOXA10 JASPAR yes 120992446
chr12 53964709 53964718 CDX1 JASPAR yes 120992447
chr12 53964709 53964719 HOXA13 JASPAR yes 120992448
chr12 53964709 53964719 HOXB13 JASPAR yes 120992449
chr12 53964709 53964719 HOXD13 JASPAR yes 120992450
Genes associated with rs562290857[chr12:53964709], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More