EnhancerDB
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  3. rs56236820[chr1:235120046]
Enhancers that have rs56236820[chr1:235120046]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235087405 235127975 enh996
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs56236820[chr1:235120046]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235119270 235120264 ZNF274 GTRD no Bone Marrow (K562) 21402604
chr1 235119270 235120264 ZNF274 GTRD no Bone Marrow (K562) 107885393
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 21402606
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 107885394
chr1 235119970 235120426 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21402607
chr1 235119970 235120426 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107885395
chr1 235120043 235120055 TEF JASPAR yes 36338276
Genes associated with rs56236820[chr1:235120046], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More