EnhancerDB
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  3. rs56240122[chr1:234898653]
Enhancers that have rs56240122[chr1:234898653]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234877045 234913055 enh12796
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs56240122[chr1:234898653]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234897364 234901169 ZNF274 GTRD no Cervix (HeLa-S3) 21397677
chr1 234898174 234900462 ZNF274 GTRD no Bone Marrow (K562) 21397679
chr1 234898284 234900422 ZNF274 GTRD no Bone Marrow (K562) 21397680
chr1 234898303 234898881 ZNF274 GTRD no Bone Marrow (K562) 21397681
chr1 234898568 234899905 ZNF274 GTRD no Bone Marrow (K562) 21397682
chr1 234898647 234898668 IRF1 JASPAR yes 36312847
chr1 234898649 234898670 IRF1 JASPAR yes 36312848
chr1 234898650 234898665 FOXP1 JASPAR yes 36312849
chr1 234898650 234898671 IRF1 JASPAR yes 36312850
chr1 234898651 234898672 IRF1 JASPAR yes 36312851
chr1 234898652 234898667 FOXP1 JASPAR yes 36312852
chr1 234898652 234898673 IRF1 JASPAR yes 36312853
chr1 234898653 234898668 FOXP1 JASPAR yes 36312854
chr1 234898653 234898674 IRF1 JASPAR yes 36312855
Genes associated with rs56240122[chr1:234898653], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More