EnhancerDB
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  3. rs562467856[chr1:229363362]
Enhancers that have rs562467856[chr1:229363362]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs562467856[chr1:229363362]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229363221 229363597 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390832
chr1 229363255 229363490 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390833
chr1 229363255 229363525 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390834
chr1 229363265 229363525 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390835
chr1 229363268 229363518 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390836
chr1 229363281 229363511 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390837
chr1 229363291 229363369 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390838
chr1 229363296 229363566 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21390839
chr1 229363299 229363485 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21390840
chr1 229363327 229363414 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21390841
chr1 229363350 229363371 REST JASPAR yes 35977176
chr1 229363351 229363370 REST JASPAR yes 35977177
Genes associated with rs562467856[chr1:229363362], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More