EnhancerDB
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  3. rs562549042[chr1:205262212]
Enhancers that have rs562549042[chr1:205262212]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205259785 205270135 enh12589
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562549042[chr1:205262212]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205260611 205264392 ZNF274 GTRD no Bone Marrow (K562) 107861587
chr1 205260611 205264392 ZNF274 GTRD no Bone Marrow (K562) 107861588
chr1 205261539 205264526 ZNF274 GTRD no Bone Marrow (K562) 107861589
chr1 205261539 205264526 ZNF274 GTRD no Bone Marrow (K562) 107861590
chr1 205262050 205262966 ZNF143 GTRD no Epithelial (MCF-7) 107861591
chr1 205262195 205263336 ZNF274 GTRD no Blood (GM12878) 107861592
chr1 205262208 205262222 PLAG1 JASPAR yes 34752367
Genes associated with rs562549042[chr1:205262212], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More