EnhancerDB
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  3. rs562675786[chr17:57837770]
Enhancers that have rs562675786[chr17:57837770]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 57820705 57849586 enh4505
Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
chr17 57837481 57837783 vista25344
VISTA
Transcript factors that have rs562675786[chr17:57837770]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 21775327
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276471
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276472
chr17 57832296 57837977 ZNF143 GTRD no Epithelial (MCF-7) 108276473
chr17 57836889 57837996 AR GTRD no Prostate (PC-3) 21775472
chr17 57836889 57837996 AR GTRD no Prostate (PC-3) 108276689
chr17 57836896 57839878 ZNF274 GTRD no Liver (HepG2) 21775473
chr17 57836896 57839878 ZNF274 GTRD no Liver (HepG2) 108276690
chr17 57837492 57838138 ZNF143 GTRD no Epithelial (MCF-7) 21775474
chr17 57837492 57838138 ZNF143 GTRD no Epithelial (MCF-7) 108276691
chr17 57837758 57837773 SCRT1 JASPAR yes 21265133
chr17 57837758 57837773 SCRT1 JASPAR yes 55078557
chr17 57837764 57839907 ZNF274 GTRD no Liver (HepG2) 21775475
chr17 57837764 57839907 ZNF274 GTRD no Liver (HepG2) 108276692
chr17 57837768 57837772 YY1 TRANSFAC yes 21265134
chr17 57837768 57837772 YY1 TRANSFAC yes 55078558
Genes associated with rs562675786[chr17:57837770], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More