EnhancerDB
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  3. rs562750228[chr1:234886402]
Enhancers that have rs562750228[chr1:234886402]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234877045 234913055 enh12796
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs562750228[chr1:234886402]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234885791 234886509 TCF7L2 GTRD no Colon (HCT116) 21397526
chr1 234885889 234886583 TCF7L2 GTRD no Colon (HCT116) 21397527
chr1 234885996 234887496 ZNF274 GTRD no Bone Marrow (K562) 21397528
chr1 234885996 234887496 ZNF274 GTRD no Bone Marrow (K562) 107881689
chr1 234886044 234887432 TEF1 GTRD no Bone (Osteoblast) 21397529
chr1 234886044 234887432 TEF1 GTRD no Bone (Osteoblast) 107881690
chr1 234886318 234887038 ZNF274 GTRD no Bone Marrow (K562) 21397530
chr1 234886331 234887505 ZNF274 GTRD no Bone Marrow (K562) 21397531
chr1 234886331 234887505 ZNF274 GTRD no Bone Marrow (K562) 107881691
chr1 234886351 234887059 ZNF274 GTRD no Bone Marrow (K562) 21397532
chr1 234886362 234887263 P63 GTRD no Skin (Keratinocyte) 21397533
chr1 234886362 234887263 P63 GTRD no Skin (Keratinocyte) 107881692
chr1 234886363 234887315 P63 GTRD no Skin (Keratinocyte) 21397534
chr1 234886363 234887315 P63 GTRD no Skin (Keratinocyte) 107881693
chr1 234886388 234887354 P63 GTRD no Skin (Keratinocyte) 21397535
chr1 234886388 234887354 P63 GTRD no Skin (Keratinocyte) 107881694
chr1 234886392 234886939 ZNF274 GTRD no Liver (HepG2) 21397536
chr1 234886393 234886410 RARA JASPAR yes 36311145
Genes associated with rs562750228[chr1:234886402], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More