EnhancerDB
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  3. rs563139960[chr2:240166278]
Enhancers that have rs563139960[chr2:240166278]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 240159334 240219661 enh6224
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs563139960[chr2:240166278]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 240166273 240166283 ALX3 JASPAR yes 82220340
chr2 240166273 240166283 GSX2 JASPAR yes 82220341
chr2 240166273 240166283 MIXL1 JASPAR yes 82220342
chr2 240166273 240166283 MNX1 JASPAR yes 82220343
chr2 240166274 240166282 ISX JASPAR yes 82220344
chr2 240166274 240166282 LHX9 JASPAR yes 82220345
chr2 240166274 240166282 LMX1B JASPAR yes 82220346
chr2 240166274 240166282 PRRX1 JASPAR yes 82220347
chr2 240166274 240166282 RAX2 JASPAR yes 82220348
chr2 240166274 240166282 SHOX JASPAR yes 82220349
chr2 240166274 240166282 UNCX JASPAR yes 82220350
chr2 240166275 240166286 PHOX2A JASPAR yes 82220351
chr2 240166275 240166286 PROP1 JASPAR yes 82220352
chr2 240166278 240166292 POU4F1 JASPAR yes 82220353
Genes associated with rs563139960[chr2:240166278], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More