EnhancerDB
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  3. rs563341559[chr1:235120552]
Enhancers that have rs563341559[chr1:235120552]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235087405 235127975 enh996
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs563341559[chr1:235120552]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 21402606
chr1 235119925 235121066 TEF1 GTRD no Bone (Osteoblast) 107885394
chr1 235120138 235120582 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21402610
chr1 235120138 235120582 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 107885399
chr1 235120157 235120593 ZNF274 GTRD no Cervix (HeLa-S3) 21402613
chr1 235120157 235120593 ZNF274 GTRD no Cervix (HeLa-S3) 107885402
chr1 235120174 235120764 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402614
chr1 235120174 235120764 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885403
chr1 235120188 235120631 ZBTB33 GTRD no Lung (A549) 107885406
chr1 235120194 235120660 ZNF274 GTRD no Bone Marrow (K562) 21402617
chr1 235120194 235120660 ZNF274 GTRD no Bone Marrow (K562) 107885408
chr1 235120218 235120642 ZNF143 GTRD no Epithelial (MCF-7) 21402619
chr1 235120218 235120642 ZNF143 GTRD no Epithelial (MCF-7) 107885410
chr1 235120231 235120683 ZBTB33 GTRD no Lung (A549) 107885411
chr1 235120255 235120698 TCF7L2 GTRD no Colon (HCT116) 21402623
chr1 235120255 235120698 TCF7L2 GTRD no Colon (HCT116) 107885416
chr1 235120326 235120645 ZNF274 GTRD no Liver (HepG2) 21402625
chr1 235120326 235120645 ZNF274 GTRD no Liver (HepG2) 107885418
chr1 235120538 235120557 PAX5 JASPAR yes 36338399
Genes associated with rs563341559[chr1:235120552], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More