EnhancerDB
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  3. rs563520599[chr1:235146912]
Enhancers that have rs563520599[chr1:235146912]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 235130325 235168235 enh997
Bone Marrow (K562) Liver Astrocyte Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Lung Heart
Transcript factors that have rs563520599[chr1:235146912]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 235146383 235149741 POLR2A UCSC Txn Factor no Conserved 107885561
chr1 235146512 235148199 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402973
chr1 235146512 235148199 RUNX3 UCSC Txn Factor no Conserved 107885562
chr1 235146512 235148199 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885563
chr1 235146566 235148196 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402974
chr1 235146566 235148196 NFIC UCSC Txn Factor no Conserved 107885564
chr1 235146566 235148196 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885565
chr1 235146788 235147207 RELA UCSC Txn Factor no Conserved 107885566
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402975
chr1 235146795 235149741 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885567
chr1 235146859 235147171 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402976
chr1 235146859 235147171 EBF1 UCSC Txn Factor no Conserved 107885568
chr1 235146859 235147171 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885569
chr1 235146874 235147164 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402977
chr1 235146874 235147164 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885570
chr1 235146882 235147059 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402978
chr1 235146882 235147059 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885571
chr1 235146897 235147153 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402979
chr1 235146897 235147153 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885572
chr1 235146907 235147271 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21402980
chr1 235146907 235147271 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107885573
chr1 235146910 235146918 FOXL1 JASPAR yes 36341936
Genes associated with rs563520599[chr1:235146912], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More