EnhancerDB
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  3. rs564289396[chr1:55431896]
Enhancers that have rs564289396[chr1:55431896]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 55426360 55441461 enh371
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Neural Stem Cells (H9) Stomach
chr1 55431735 55431939 vista1677
VISTA
Transcript factors that have rs564289396[chr1:55431896]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 55431568 55431938 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805406
chr1 55431648 55431938 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805407
chr1 55431668 55431944 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805409
chr1 55431671 55431947 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805410
chr1 55431671 55432047 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805411
chr1 55431682 55431952 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805412
chr1 55431695 55431995 NFYB UCSC Txn Factor no Conserved 107805413
chr1 55431695 55431995 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107805414
chr1 55431702 55431942 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107805415
chr1 55431713 55431976 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107805416
chr1 55431716 55431965 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107805417
chr1 55431723 55431923 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107805418
chr1 55431883 55431901 IRF2 JASPAR yes 29011469
chr1 55431883 55431901 IRF2 JASPAR yes 118293835
chr1 55431888 55431900 IRF1 JASPAR yes 29011470
chr1 55431888 55431900 IRF1 JASPAR yes 118293836
Genes associated with rs564289396[chr1:55431896], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More