EnhancerDB
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  3. rs564530854[chr12:120666684]
Enhancers that have rs564530854[chr12:120666684]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 120660005 120685163 enh2636
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs564530854[chr12:120666684]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 120665990 120669835 POLR2A UCSC Txn Factor no Conserved 108063015
chr12 120665990 120669835 POLR2A UCSC Txn Factor no Conserved 108063016
chr12 120665990 120669835 POLR2A UCSC Txn Factor no Conserved 108063017
chr12 120666292 120667365 TCF7L2 GTRD no Colon (HCT116) 21578307
chr12 120666292 120667365 TCF7L2 GTRD no Colon (HCT116) 108063018
chr12 120666435 120666785 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21578308
chr12 120666435 120666785 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108063019
chr12 120666472 120666955 ZNF274 GTRD no Bone Marrow (K562) 21578309
chr12 120666472 120666955 ZNF274 GTRD no Bone Marrow (K562) 108063020
chr12 120666506 120667043 ZNF274 GTRD no Bone Marrow (K562) 21578310
chr12 120666506 120667043 ZNF274 GTRD no Bone Marrow (K562) 108063021
chr12 120666528 120666987 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578311
chr12 120666528 120666987 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063022
chr12 120666528 120667105 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578312
chr12 120666528 120667105 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063023
chr12 120666533 120667053 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578313
chr12 120666533 120667053 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063024
chr12 120666541 120666868 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578314
chr12 120666541 120666868 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063025
chr12 120666562 120667162 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578315
chr12 120666562 120667162 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063026
chr12 120666574 120666890 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21578316
chr12 120666574 120666890 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108063027
chr12 120666594 120666994 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578317
chr12 120666594 120666994 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063028
chr12 120666595 120667484 TCF7L2 GTRD no Colon (HCT116) 21578318
chr12 120666595 120667484 TCF7L2 GTRD no Colon (HCT116) 108063029
chr12 120666610 120666974 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578319
chr12 120666610 120666974 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063030
chr12 120666616 120666898 ZNF274 GTRD no Bone Marrow (K562) 21578320
chr12 120666616 120666898 ZNF274 GTRD no Bone Marrow (K562) 108063031
chr12 120666628 120667298 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578321
chr12 120666628 120667298 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063032
chr12 120666630 120667070 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21578322
chr12 120666630 120667070 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108063033
chr12 120666630 120667254 TEAD4 UCSC Txn Factor no Conserved 108063034
chr12 120666639 120666989 CTCF UCSC Txn Factor no Conserved 108063035
chr12 120666640 120666910 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578323
chr12 120666640 120666910 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063036
chr12 120666644 120667180 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21578324
chr12 120666644 120667180 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108063037
chr12 120666650 120667026 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578325
chr12 120666650 120667026 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063038
chr12 120666654 120666925 RAD21 UCSC Txn Factor no Conserved 108063039
chr12 120666657 120666901 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21578326
chr12 120666657 120666901 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108063040
chr12 120666667 120667023 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21578327
chr12 120666667 120667023 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108063041
chr12 120666671 120666981 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21578328
chr12 120666671 120666981 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108063042
chr12 120666679 120666895 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108063043
chr12 120666679 120667063 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21578329
chr12 120666679 120667063 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108063044
chr12 120666680 120666910 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21578330
chr12 120666680 120666910 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108063045
chr12 120666680 120667340 TCF7L2 GTRD no Colon (HCT116) 21578331
chr12 120666680 120667340 TCF7L2 GTRD no Colon (HCT116) 108063046
chr12 120666681 120666686 SP1 TRANSFAC yes 124156282
chr12 120666682 120666694 TFAP2A JASPAR yes 124156283
chr12 120666682 120666694 TFAP2B JASPAR yes 124156284
chr12 120666682 120666694 TFAP2C JASPAR yes 124156285
chr12 120666682 120666697 TFAP2A JASPAR yes 124156286
chr12 120666682 120666697 TFAP2C JASPAR yes 124156287
chr12 120666683 120666692 TFAP2A JASPAR yes 124156288
chr12 120666684 120666693 TFAP2A JASPAR yes 124156289
Genes associated with rs564530854[chr12:120666684], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More