EnhancerDB
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  3. rs564715239[chr1:218671260]
Enhancers that have rs564715239[chr1:218671260]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 218644305 218676855 enh12672
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Esophagus Astrocyte Stomach Placenta Colon (HCT116) Uterus Peripheral Blood (MM.1S) Muscle (Myoblast) Breast Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs564715239[chr1:218671260]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 218670916 218672285 ZBTB33 GTRD no Lung (A549) 107870511
chr1 218671096 218672164 ZNF143 GTRD no Epithelial (MCF-7) 21380924
chr1 218671096 218672164 ZNF143 GTRD no Epithelial (MCF-7) 107870512
chr1 218671210 218672416 ZNF143 GTRD no Epithelial (MCF-7) 21380925
chr1 218671210 218672416 ZNF143 GTRD no Epithelial (MCF-7) 107870513
chr1 218671211 218672427 ZNF143 GTRD no Epithelial (MCF-7) 21380926
chr1 218671211 218672427 ZNF143 GTRD no Epithelial (MCF-7) 107870514
chr1 218671241 218671262 IRF1 JASPAR yes 35387765
chr1 218671245 218672277 ZNF143 GTRD no Epithelial (MCF-7) 21380927
chr1 218671245 218672277 ZNF143 GTRD no Epithelial (MCF-7) 107870515
chr1 218671246 218671261 FOXP1 JASPAR yes 35387766
chr1 218671247 218671262 FOXP1 JASPAR yes 35387767
chr1 218671248 218671263 FOXP1 JASPAR yes 35387768
chr1 218671257 218672209 ZNF143 GTRD no Epithelial (MCF-7) 21380928
chr1 218671257 218672209 ZNF143 GTRD no Epithelial (MCF-7) 107870516
chr1 218671257 218672217 ZBTB33 GTRD no Brain (SK-N-SH) 107870517
Genes associated with rs564715239[chr1:218671260], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More