EnhancerDB
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  3. rs564758652[chr16:88828702]
Enhancers that have rs564758652[chr16:88828702]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs564758652[chr16:88828702]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 21736871
chr16 88823651 88829212 TCF7L2 GTRD no Colon (HCT116) 108223302
chr16 88825532 88829851 POLR2A UCSC Txn Factor no Conserved 108223304
chr16 88827644 88830105 ZNF143 GTRD no Epithelial (MCF-7) 21736891
chr16 88827644 88830105 ZNF143 GTRD no Epithelial (MCF-7) 108223325
chr16 88828523 88830154 TCF7L2 GTRD no Colon (HCT116) 21736892
chr16 88828523 88830154 TCF7L2 GTRD no Colon (HCT116) 108223326
chr16 88828697 88828707 SP1 JASPAR yes 12301164
chr16 88828698 88828703 SP1 TRANSFAC yes 12301165
Genes associated with rs564758652[chr16:88828702], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More