EnhancerDB
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  3. rs564821946[chr1:234862230]
Enhancers that have rs564821946[chr1:234862230]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 234827105 234875936 enh12795
Bone Marrow (K562) Liver Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 234862200 234862535 vista5632
VISTA
Transcript factors that have rs564821946[chr1:234862230]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 234861607 234862248 ZNF143 GTRD no Epithelial (MCF-7) 21396671
chr1 234861607 234862248 ZNF143 GTRD no Epithelial (MCF-7) 107881620
chr1 234861610 234862648 ZNF274 GTRD no Liver (HepG2) 21396672
chr1 234861610 234862648 ZNF274 GTRD no Liver (HepG2) 107881621
chr1 234861651 234863663 ZNF274 GTRD no Liver (HepG2) 21396674
chr1 234861651 234863663 ZNF274 GTRD no Liver (HepG2) 107881623
chr1 234861659 234862323 ZNF274 GTRD no Liver (HepG2) 21396676
chr1 234861659 234862323 ZNF274 GTRD no Liver (HepG2) 107881624
chr1 234861757 234862248 ZNF143 GTRD no Epithelial (MCF-7) 21396679
chr1 234861757 234862248 ZNF143 GTRD no Epithelial (MCF-7) 107881625
chr1 234861769 234862720 ZNF274 GTRD no Liver (HepG2) 21396682
chr1 234861769 234862720 ZNF274 GTRD no Liver (HepG2) 107881626
chr1 234862230 234862248 NFYA JASPAR yes 36307980
chr1 234862230 234862248 NFYA JASPAR yes 118484536
Genes associated with rs564821946[chr1:234862230], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More