EnhancerDB
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  3. rs565021107[chr1:19730599]
Enhancers that have rs565021107[chr1:19730599]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 19711685 19745775 enh98
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Thyroid Neural Stem Cells (H9) Thymus Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs565021107[chr1:19730599]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 19730595 19730603 TBX5 JASPAR yes 27185997
chr1 19730595 19730604 ZEB1 JASPAR yes 27185998
chr1 19730595 19730610 SCRT1 JASPAR yes 27185999
chr1 19730596 19730606 FIGLA JASPAR yes 27186000
chr1 19730596 19730606 ID4 JASPAR yes 27186001
chr1 19730596 19730606 TCF3 JASPAR yes 27186002
chr1 19730596 19730606 TCF4 JASPAR yes 27186003
chr1 19730597 19730606 SNAI2 JASPAR yes 27186004
chr1 19730598 19730603 USF2 TRANSFAC yes 27186005
Genes associated with rs565021107[chr1:19730599], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More